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https://github.com/pydata/xarray/issues/2037#issuecomment-1063705114 https://api.github.com/repos/pydata/xarray/issues/2037 1063705114 IC_kwDOAMm_X84_Ztoa 47473455 2022-03-10T06:20:40Z 2022-03-10T06:20:40Z NONE

I am posting here a temporal solution to this in case someone has the same issue. Based on https://stackoverflow.com/questions/45693688/xarray-automatically-applying-fillvalue-to-coordinates-on-netcdf-output py for var in ds.variables: if '_FillValue' not in ds[var].attrs: ds[var].attrs['_FillValue'] = False

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