html_url,issue_url,id,node_id,user,created_at,updated_at,author_association,body,reactions,performed_via_github_app,issue
https://github.com/pydata/xarray/issues/2275#issuecomment-422459458,https://api.github.com/repos/pydata/xarray/issues/2275,422459458,MDEyOklzc3VlQ29tbWVudDQyMjQ1OTQ1OA==,1217238,2018-09-18T16:25:32Z,2018-09-18T16:25:32Z,MEMBER,"You might need to make a new conda environment. I'm not sure why it's only
showing 1.2.4 as the latest release.

On Tue, Sep 18, 2018 at 6:37 AM dkobashi <notifications@github.com> wrote:

> Your suggestion did not work. I got the following. Is there any other way
> to update netcdf4 without messing up the dependencies of other python
> tools? Thanks, -DJ
>
> ~$ conda update netcdf4
> Fetching package metadata ...........
> Solving package specifications: .
>
> # All requested packages already installed.
> # packages in environment at ~/anaconda2/envs/roms:
> #
> netcdf4                   1.2.4               np113py27_0
>
> —
> You are receiving this because you commented.
> Reply to this email directly, view it on GitHub
> <https://github.com/pydata/xarray/issues/2275#issuecomment-422396141>, or mute
> the thread
> <https://github.com/notifications/unsubscribe-auth/ABKS1leMnGsJ9MqJMP7j2pMDrij6dKv8ks5ucPc0gaJpZM4VJsnq>
> .
>
","{""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,339909651
https://github.com/pydata/xarray/issues/2275#issuecomment-422396141,https://api.github.com/repos/pydata/xarray/issues/2275,422396141,MDEyOklzc3VlQ29tbWVudDQyMjM5NjE0MQ==,8714949,2018-09-18T13:36:54Z,2018-09-18T13:36:54Z,NONE,"Your suggestion did not work. I got the following. Is there any other way to update netcdf4 without messing up the dependencies of other python tools? Thanks, -DJ
```
~$ conda update netcdf4
Fetching package metadata ...........
Solving package specifications: .

# All requested packages already installed.
# packages in environment at ~/anaconda2/envs/roms:
#
netcdf4                   1.2.4               np113py27_0  
","{""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,339909651
https://github.com/pydata/xarray/issues/2275#issuecomment-422218389,https://api.github.com/repos/pydata/xarray/issues/2275,422218389,MDEyOklzc3VlQ29tbWVudDQyMjIxODM4OQ==,1217238,2018-09-18T00:58:25Z,2018-09-18T00:58:25Z,MEMBER,@dkobashi  `conda update netcdf4` should do it for you,"{""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,339909651
https://github.com/pydata/xarray/issues/2275#issuecomment-422152422,https://api.github.com/repos/pydata/xarray/issues/2275,422152422,MDEyOklzc3VlQ29tbWVudDQyMjE1MjQyMg==,8714949,2018-09-17T20:07:03Z,2018-09-17T20:07:03Z,NONE,"I use Anaconda python.

My conda version is as follow
               platform : linux-64
          conda version : 4.3.32
       conda is private : False
      conda-env version : 4.3.32
    conda-build version : 3.0.27
         python version : 2.7.14.final.0
       requests version : 2.18.4

I attach xarray.show_versions() at the bottom.  I see it uses the same version as the other on the post.
I also attach the error I got below.

*** Error in `/home/dj/anaconda2/envs/roms/bin/python': free(): invalid next size (fast): 0x0000556928b744e0 ***

 A funny thing is that I have no problem getting the data using netCDF4-python. The file size of the data is big (50-100GB. netCDF4 format), but again I was able to get the data with netCDF4-python. So I guess I need to update netCDF4-python, but I don't know how.

Thanks,

INSTALLED VERSIONS
------------------
commit: None
python: 2.7.14.final.0
python-bits: 64
OS: Linux
OS-release: 4.15.0-34-generic
machine: x86_64
processor: x86_64
byteorder: little
LC_ALL: None
LANG: en_US.UTF-8
LOCALE: None.None

xarray: 0.10.8
pandas: 0.21.0
numpy: 1.13.3
scipy: 1.0.0
netCDF4: 1.2.4
h5netcdf: None
h5py: 2.7.0
Nio: None
zarr: None
bottleneck: None
cyordereddict: None
dask: 0.16.0
distributed: 1.20.0
matplotlib: 2.2.2
cartopy: 0.15.0
seaborn: 0.9.0
setuptools: 36.5.0.post20170921
pip: 18.0
conda: None
pytest: None
IPython: 5.4.1
sphinx: None
","{""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,339909651
https://github.com/pydata/xarray/issues/2275#issuecomment-422126176,https://api.github.com/repos/pydata/xarray/issues/2275,422126176,MDEyOklzc3VlQ29tbWVudDQyMjEyNjE3Ng==,1217238,2018-09-17T18:43:35Z,2018-09-17T18:43:35Z,MEMBER,@dkobashi how did you install Python?,"{""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,339909651
https://github.com/pydata/xarray/issues/2275#issuecomment-422116613,https://api.github.com/repos/pydata/xarray/issues/2275,422116613,MDEyOklzc3VlQ29tbWVudDQyMjExNjYxMw==,8714949,2018-09-17T18:13:25Z,2018-09-17T18:13:25Z,NONE,I am having the same problem. How can I update netCDF4 library? Thanks in advance. -DJ,"{""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,339909651
https://github.com/pydata/xarray/issues/2275#issuecomment-404088892,https://api.github.com/repos/pydata/xarray/issues/2275,404088892,MDEyOklzc3VlQ29tbWVudDQwNDA4ODg5Mg==,16919188,2018-07-11T08:31:53Z,2018-07-11T08:31:53Z,NONE,I updated the netcdf4 librairie and it's works. Thanks,"{""total_count"": 1, ""+1"": 1, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,339909651
https://github.com/pydata/xarray/issues/2275#issuecomment-404082788,https://api.github.com/repos/pydata/xarray/issues/2275,404082788,MDEyOklzc3VlQ29tbWVudDQwNDA4Mjc4OA==,16919188,2018-07-11T08:09:32Z,2018-07-11T08:09:32Z,NONE,"This error appears immediately when i write <code>xr.open_dataset(f)</code> on Ipython console :

<code>An error ocurred while starting the kernel
*** Error in `/local01/appli/anaconda2/bin/python': free(): invalid next size (fast): 0x0000000003086710 ***</code>
</p></details>
<details open><summary><code>xr.show_versions()
</code></summary><p>

```
INSTALLED VERSIONS
------------------
commit: None
python: 2.7.13.final.0
python-bits: 64
OS: Linux
OS-release: 3.16.0-4-amd64
machine: x86_64
processor: 
byteorder: little
LC_ALL: en_US.iso885915
LANG: fr_FR@euro
LOCALE: None.None

xarray: 0.10.7
pandas: 0.20.3
numpy: 1.13.1
scipy: 0.19.1
netCDF4: 1.2.4
h5netcdf: 0.6.1
h5py: 2.7.0
Nio: None
zarr: None
bottleneck: 1.2.1
cyordereddict: 1.0.0
dask: 0.18.1
distributed: 1.22.0
matplotlib: 2.0.2
cartopy: None
seaborn: None
setuptools: 36.4.0
pip: 9.0.1
conda: 4.5.7
pytest: 3.2.1
IPython: 5.3.0
sphinx: 1.6.3
```
</p></details>","{""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,339909651
https://github.com/pydata/xarray/issues/2275#issuecomment-403954586,https://api.github.com/repos/pydata/xarray/issues/2275,403954586,MDEyOklzc3VlQ29tbWVudDQwMzk1NDU4Ng==,1217238,2018-07-10T20:26:39Z,2018-07-10T20:26:39Z,MEMBER,"Can you please share the output of `xarray.show_versions()` and an example of the your code that triggers this error?

My free is that this is a bug in one of the underlying libraries xarray uses for reading netCDF files.","{""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,339909651