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  • xarray · 23 ✖

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sha message author_date ▲ committer_date raw_author raw_committer repo author committer
55173e8ec637dd9e2c36e0c8c7a0aa90ff048de0 warn and return bytes undecoded in case of UnicodeDecodeError in h5netcdf-backend (#8874) * warn and return bytes undecoded in case of UnicodeDecodeError in h5netcdf-backend * add whats-new.rst entry * merge maybe_decode_bytes function into _read_attributes, add attribute and variable name to warning 2024-03-26T15:08:40Z 2024-03-26T15:08:40Z Kai Mühlbauer 3e0e6e9719b7d638c9d5d1d6c8d6245171e5a25d GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 kmuehlbauer 5821660 web-flow 19864447
7c3d2dd2987f855a44d91993f73a9e1aef0a481d numpy 2.0 copy-keyword and trapz vs trapezoid (#8865) * adapt handling of copy keyword argument in coding/strings.py for numpy >= 2.0dev * import either trapz or trapezoid depending on numpy version * add /change whats-new.rst entry * fix mypy, fix import order * adapt handling of copy keyword argument in coding/strings.py for numpy >= 2.0dev 2024-03-22T15:30:11Z 2024-03-22T15:30:11Z Kai Mühlbauer 3e0e6e9719b7d638c9d5d1d6c8d6245171e5a25d GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 kmuehlbauer 5821660 web-flow 19864447
0b6716d12dec5628618137c8a34a120b60ba9c30 FIX: adapt handling of copy keyword argument in scipy backend for numpy >= 2.0dev (#8851) * FIX: adapt handling of copy keyword argument in scipy backend for numpy >= 2.0dev FIX: adapt handling of copy keyword argument in scipy backend for numpy >= 2.0dev * Add whats-new.rst entry * Apply suggestions from code review --------- Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> 2024-03-20T14:47:45Z 2024-03-20T14:47:45Z Kai Mühlbauer 3e0e6e9719b7d638c9d5d1d6c8d6245171e5a25d GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 kmuehlbauer 5821660 web-flow 19864447
61ffc38a495b224c49f9486404ee3bdcb9049663 FIX: do not cast _FillValue/missing_value in CFMaskCoder if _Unsigned is provided (#8852) * FIX: do not cast _FillValue/missing_value in CFMaskCoder if _Unsigned is provided * add whats-new.rst entry * add comment on _Unsigned 2024-03-19T14:25:37Z 2024-03-19T14:25:37Z Kai Mühlbauer 3e0e6e9719b7d638c9d5d1d6c8d6245171e5a25d GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 kmuehlbauer 5821660 web-flow 19864447
fbcac7611bf9a16750678f93483d3dbe0e261a0a correctly encode/decode _FillValues/missing_values/dtypes for packed data (#8713) * correctly encode/decode _FillValues * fix mypy * fix CFMaskCode test * fix scale/offset * avert zarr issue * add whats-new.rst entry * refactor fillvalue/missing value check to catch non-conforming values, apply review suggestions * fix typing * suppress warning in doc * FIX: silence SerializationWarnings * FIX: silence mypy by casting to string early * Update xarray/tests/test_conventions.py Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Shorten test, add comment checking for two warnings * make test even shorter --------- Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> 2024-03-15T16:31:04Z 2024-03-15T16:31:04Z Kai Mühlbauer 3e0e6e9719b7d638c9d5d1d6c8d6245171e5a25d GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 kmuehlbauer 5821660 web-flow 19864447
28fa741fda90a95c710ae3a30678cfeba725ecff Remove xfails related to SerializeableLock (#8591) 2024-01-05T16:12:51Z 2024-01-05T16:12:51Z Kai Mühlbauer 3e0e6e9719b7d638c9d5d1d6c8d6245171e5a25d GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 kmuehlbauer 5821660 web-flow 19864447
693f0b91b4381f5a672cb93ff8113abd1dc4957c ENH: vendor SerializableLock from dask and use as default backend lock, adapt tests (#8571) * vendor SerializableLock from dask, adapt tests * Update doc/whats-new.rst --------- Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> 2024-01-04T06:41:35Z 2024-01-04T06:41:35Z Kai Mühlbauer 3e0e6e9719b7d638c9d5d1d6c8d6245171e5a25d GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 kmuehlbauer 5821660 web-flow 19864447
c35d6b6cfd3bf8e8dadac1c26bd7d55f9147c9f5 FIX: reverse index output of bottleneck move_argmax/move_argmin functions (#8552) * FIX: reverse index output of bottleneck move_argmax/move_argmin functions, add move_argmax/move_argmin to bottleneck tests * add whats-new.rst entry 2023-12-21T02:08:00Z 2023-12-21T02:08:00Z Kai Mühlbauer 3e0e6e9719b7d638c9d5d1d6c8d6245171e5a25d GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 kmuehlbauer 5821660 web-flow 19864447
74901af7df26a1e795ee62ce98e3cab545347306 preserve vlen string dtypes, allow vlen string fill_values (#7869) * preserve vlen string dtypes, allow vlen string fill_values * update min-deps h5py->3.7, h5netcdf -> 1.1 * add doc/whats-new.rst entry * add suggestions from review * remove stale entry 2023-11-17T15:25:59Z 2023-11-17T15:25:59Z Kai Mühlbauer 3e0e6e9719b7d638c9d5d1d6c8d6245171e5a25d GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 kmuehlbauer 5821660 web-flow 19864447
8f3a302f2be590b86acd66bbbd468e9b0ee20498 fix regression in time-like check when decoding masked data (#8277) * fix regression in time-like check when decoding masked data * add test * use _unpack_netcdf_time_units to check for proper units-string * test with decode_times 2023-10-18T16:50:18Z 2023-10-18T16:50:18Z Kai Mühlbauer 3e0e6e9719b7d638c9d5d1d6c8d6245171e5a25d GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 kmuehlbauer 5821660 web-flow 19864447
84f5a0d2eef69cd2ee127c138e61066637d9f6ac [skip-ci] dev whats-new (#8232) 2023-09-26T15:24:49Z 2023-09-26T15:24:49Z Kai Mühlbauer 3e0e6e9719b7d638c9d5d1d6c8d6245171e5a25d GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 kmuehlbauer 5821660 web-flow 19864447
ba7f2d5dc8a6f77c91a3bb9e54b5ca39abcdb939 Release 2023.09.0 (#8229) 2023-09-26T08:12:44Z 2023-09-26T08:12:44Z Kai Mühlbauer 3e0e6e9719b7d638c9d5d1d6c8d6245171e5a25d GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 kmuehlbauer 5821660 web-flow 19864447
da647b06312bd93c3412ddd712bf7ecb52e3f28b decode variable with mismatched coordinate attribute (#8195) * decode variable with mismatched coordinate attribute, warn/raise meaningful error * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update xarray/conventions.py Co-authored-by: Illviljan <14371165+Illviljan@users.noreply.github.com> * use set comparison as suggested by review * use emit_user_level_warning for all occurrences * fix typing and docstring * fix typing and docstring * silently ignore names of missing variables as per review * only decode if there is at least one variable matching a coordinate * fix typing * update docstring * Apply suggestions from code review Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * add review suggestion Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * Fix test --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Illviljan <14371165+Illviljan@users.noreply.github.com> Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> 2023-09-25T11:30:33Z 2023-09-25T11:30:33Z Kai Mühlbauer 3e0e6e9719b7d638c9d5d1d6c8d6245171e5a25d GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 kmuehlbauer 5821660 web-flow 19864447
05b3a211d5b93acd45be19eab1d0a6e9c72cff8d test_interpolate_pd_compat with range of fill_value's (#8189) * ENH: test_interpolate_pd_compat with range of fill_value's * add whats-new.rst entry 2023-09-24T15:28:30Z 2023-09-24T15:28:30Z Kai Mühlbauer 3e0e6e9719b7d638c9d5d1d6c8d6245171e5a25d GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 kmuehlbauer 5821660 web-flow 19864447
a4f80b23d32e9c3986e3342182fe382d8081c3c2 override `units` for datetime64/timedelta64 variables to preserve integer dtype (#8201) * remove `dtype` from encoding for datetime64/timedelta64 variables to prevent unnecessary casts * adapt tests * add whats-new.rst entry * Update xarray/coding/times.py Co-authored-by: Spencer Clark <spencerkclark@gmail.com> * Update doc/whats-new.rst Co-authored-by: Spencer Clark <spencerkclark@gmail.com> * add test per review suggestion, replace .kind-check with np.issubdtype-check * align timedelta64 check with datetime64 check * override units instead of dtype * remove print statement * warn in case of serialization to floating point, too * align if-else * Add instructions to warnings * Fix test * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * use warnings.catch_warnings * Update doc/whats-new.rst Co-authored-by: Spencer Clark <spencerkclark@gmail.com> --------- Co-authored-by: Spencer Clark <spencerkclark@gmail.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> 2023-09-24T15:05:25Z 2023-09-24T15:05:25Z Kai Mühlbauer 3e0e6e9719b7d638c9d5d1d6c8d6245171e5a25d GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 kmuehlbauer 5821660 web-flow 19864447
ee7c8f3653214eb8ea5ea686f34a527fd4bf2c08 remove invalid statement from doc/user-guide/io.rst (#8194) 2023-09-19T01:02:22Z 2023-09-19T01:02:22Z Kai Mühlbauer 3e0e6e9719b7d638c9d5d1d6c8d6245171e5a25d GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 kmuehlbauer 5821660 web-flow 19864447
b6d4bf72fd56014c0bd142bc438d6204d8dfd1ef Preserve nanosecond resolution when encoding/decoding times (#7827) * preserve nanosecond resolution when encoding/decoding times. * Apply suggestions from code review Co-authored-by: Spencer Clark <spencerkclark@gmail.com> * use emit_user_level_warning * move time alignment for nc3 to encode_nc3_variable * fix test for encode_cf_timedelta * fix CFMaskCoder for time-like (also allow timedelta64), add first tests * rename to _unpack_time_units_and_ref_date as suggested in review * refactor delta -> time_units as suggested in review * refactor out function _time_units_to_timedelta64, reorder flow and remove unneeded checks, apply filterwarnings, adapt tests * import _is_time_like from coding.variables * adapt tests, add _numpy_to_netcdf_timeunit-conversion function * adapt tests, add _numpy_to_netcdf_timeunit-conversion function * adapt test as per review, remove arm_xfail for backend test * add whats-new.rst entry * Update doc/whats-new.rst Co-authored-by: Spencer Clark <spencerkclark@gmail.com> * Update doc/whats-new.rst Co-authored-by: Spencer Clark <spencerkclark@gmail.com> * fix whats-new.rst --------- Co-authored-by: Spencer Clark <spencerkclark@gmail.com> 2023-09-17T08:15:25Z 2023-09-17T08:15:25Z Kai Mühlbauer 3e0e6e9719b7d638c9d5d1d6c8d6245171e5a25d GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 kmuehlbauer 5821660 web-flow 19864447
45bce44dcb260c62ab69b11ddb07b011bfa6194c FIX: use "krogh" as interpolator method-string instead of "krog" (#8187) * FIX: use "krogh" as interpolator method-string instead of "krog" * Update xarray/tests/test_missing.py Co-authored-by: Illviljan <14371165+Illviljan@users.noreply.github.com> * Update xarray/core/missing.py Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> --------- Co-authored-by: Illviljan <14371165+Illviljan@users.noreply.github.com> Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> 2023-09-16T15:55:37Z 2023-09-16T15:55:37Z Kai Mühlbauer 3e0e6e9719b7d638c9d5d1d6c8d6245171e5a25d GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 kmuehlbauer 5821660 web-flow 19864447
0c4f16574a881e865e39e4621cbf6b95b8d1f0f2 FIX: handle NaT values in dt-accessor (#8084) * FIX: handle NaT values in dt-accessor * FIX: only use isnat-check for datetimes not cftime * check for <NA> and apply needed dtype for isocalendar * Keep current version without NaT * add whats-new.rst entry 2023-09-14T13:57:36Z 2023-09-14T13:57:36Z Kai Mühlbauer 3e0e6e9719b7d638c9d5d1d6c8d6245171e5a25d GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 kmuehlbauer 5821660 web-flow 19864447
5f396266280e8666740b346aaa77060e94c20ac5 preserve boolean dtype in encoding (#7720) * preserve boolean-dtype within encoding, adapt test * add comment as per review * add whats-new.rst entry 2023-04-10T09:26:25Z 2023-04-10T09:26:25Z Kai Mühlbauer 3e0e6e9719b7d638c9d5d1d6c8d6245171e5a25d GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 kmuehlbauer 5821660 web-flow 19864447
551de704bc5ddaa939b48a06e52d519f1fe06fee Implement more Variable Coders (#7719) * implement coders, adapt tests * Apply suggestions from code review Co-authored-by: Illviljan <14371165+Illviljan@users.noreply.github.com> * add whats-new.rst entry * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fix whats-new.rst entry * add PR link to whats-new.rst entry * return early if no missing values defined * fix check --------- Co-authored-by: Illviljan <14371165+Illviljan@users.noreply.github.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> 2023-04-07T03:57:49Z 2023-04-07T03:57:49Z Kai Mühlbauer 3e0e6e9719b7d638c9d5d1d6c8d6245171e5a25d GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 kmuehlbauer 5821660 web-flow 19864447
b4e3cbcf17374b68477ed3ff7a8a52c82837ad91 Fill missing data_vars during concat by reindexing (#7400) * Fill missing data variables during concat by reindexing * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * FIX: use `Any` for type of `fill_value` as this seems consistent with other places * ENH: add tests * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * typing Co-authored-by: Illviljan <14371165+Illviljan@users.noreply.github.com> * typing Co-authored-by: Illviljan <14371165+Illviljan@users.noreply.github.com> * typing Co-authored-by: Illviljan <14371165+Illviljan@users.noreply.github.com> * use None instead of False Co-authored-by: Illviljan <14371165+Illviljan@users.noreply.github.com> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * concatenate variable in any case if variable has concat_dim * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * add tests from @scottcha #3545 * typing * fix typing * fix tests with, finalize typing * add whats-new.rst entry * Update xarray/tests/test_concat.py Co-authored-by: Illviljan <14371165+Illviljan@users.noreply.github.com> * Update xarray/tests/test_concat.py Co-authored-by: Illviljan <14371165+Illviljan@users.noreply.github.com> * add TODO, fix numpy.random.default_rng * change np.random to use Generator * move code for variable order into dedicated function, merge with _parse_datasets, provide fast lane for variable order estimation * fix comment * Use order from first dataset, append missing variables to the end * ensure fill_value is dict * ensure fill_value in align * simplify combined_var, fix test * revert fill_value for alignment.py * derive variable order in order of appearance as suggested per review * remove unneeded enumerate * Use alignment.reindex_variables instea… 2023-01-20T16:04:25Z 2023-01-20T16:04:25Z Kai Mühlbauer 3e0e6e9719b7d638c9d5d1d6c8d6245171e5a25d GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 kmuehlbauer 5821660 web-flow 19864447
5470d933452d88deb17cc9294a164c4a03f55dec MNT: prepare h5netcdf backend for (coming) change in dimension handling (#6200) * prepare h5netcdf backend for (coming) change in dimension handling * [test-upstream] 2022-01-29T07:55:01Z 2022-01-29T07:55:01Z Kai Mühlbauer 3e0e6e9719b7d638c9d5d1d6c8d6245171e5a25d GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 kmuehlbauer 5821660 web-flow 19864447

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