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78f749166ae4330c638f8daec3cf25530ea6588b Docs page on interoperability (#7992) * add page on internal design * add xarray-datatree to intersphinx mapping * typo * add subheadings to the accessors page * Revert "add page on internal design" This reverts commit 198f67b9a5a5f0b1b37ba3f0f844c2d706a2bfab. * rename page on variables * whatsnew * page on interoperability * add interoperability page to index * fix whatsnew * sel->isel * add section on lazy indexing * actually show lazy indexing example * link to custom indexes page * fix some formatting * put encoding last * attrs and encoding are not ordered dicts Co-authored-by: Illviljan <14371165+Illviljan@users.noreply.github.com> * reword lack of support for subclassing Co-authored-by: Maximilian Roos <5635139+max-sixty@users.noreply.github.com> * remove duplicate word * encourage contributions to supporting subclassing --------- Co-authored-by: Illviljan <14371165+Illviljan@users.noreply.github.com> Co-authored-by: Maximilian Roos <5635139+max-sixty@users.noreply.github.com> 2023-10-26T16:04:33Z 2023-10-26T16:04:33Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
67268f1159fc5b4aee5c644b37d84036d8fc1528 Docs page on internal design (#7991) * add page on internal design * add xarray-datatree to intersphinx mapping * typo * add subheadings to the accessors page * Revert "add page on internal design" This reverts commit 198f67b9a5a5f0b1b37ba3f0f844c2d706a2bfab. * rename page on variables * whatsnew * sel->isel * add section on lazy indexing * actually show lazy indexing example * size -> sizes Co-authored-by: Michael Niklas <mick.niklas@gmail.com> * link to UXarray * plugin -> backend Co-authored-by: Michael Niklas <mick.niklas@gmail.com> * Don't pretend .dims is a set --------- Co-authored-by: Michael Niklas <mick.niklas@gmail.com> Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> Co-authored-by: Maximilian Roos <5635139+max-sixty@users.noreply.github.com> 2023-09-08T15:41:31Z 2023-09-08T15:41:31Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
efa28639eae14b3958363b83fe6f89c37f870478 Core team member guide (#7999) * copy napari core dev guide * replace all instance of napari with xarray * rewrite some napari-specific sentences * update links in the resources * list tasks * fixes * mention the plan to merge label Co-authored-by: Michael Niklas <mick.niklas@gmail.com> * core dev -> core team member * choose your own title * rearrange sections to put tasks before code contributions * remove dramatic nuclear launch keys analogy * link to bi-weekly developers meeting * add more types of tasks * mention presenting tutorials * mention representing xarray in user communities * yet more tasks * note that you don't have to do everything * paragraph at top making it clear no extra work is required! * whatsnew * add section on issue triage * Apply suggestions from Deepak's code review Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * various fixes * Update CORE_TEAM_GUIDE.md Co-authored-by: Joe Hamman <jhamman1@gmail.com> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * How to run benchmark CI using PR label --------- Co-authored-by: Michael Niklas <mick.niklas@gmail.com> Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> Co-authored-by: Joe Hamman <jhamman1@gmail.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> 2023-07-21T13:48:25Z 2023-07-21T13:48:25Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
90d5cd4fab5aeb1a742da64b57ed5bece4e38ca8 Move whats-new entry 2023-07-18T03:31:27Z 2023-07-18T03:31:27Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
4ad85f55dcae8959bbacb78e630d77d12493dbd8 Remove future release notes before this release So that the unreleased v2023.07.1 notes don't show up in the changelog of the now-to-be-released v2023.07.0 docs build 2023-07-17T06:15:40Z 2023-07-17T06:15:40Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
69236b8cfae9cf38682d79b766e92d6eba215c3c Update whats-new.rst for new release (#7993) 2023-07-17T06:03:42Z 2023-07-17T06:03:42Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
0040bbc09af0262ac18d1ab2e7d2f6fafda51768 Release summary for v2023.07.0 (#7979) * release summary * Date format Co-authored-by: Anderson Banihirwe <13301940+andersy005@users.noreply.github.com> --------- Co-authored-by: Anderson Banihirwe <13301940+andersy005@users.noreply.github.com> 2023-07-13T16:33:42Z 2023-07-13T16:33:42Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
58096a6549ac96e7fd751fe1c0ca83b1d69ee2ef Chunked array docs (#7951) * draft updates * discuss array API standard * fix sparse examples so they run * Deepak's suggestions Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * link to duck arrays user guide from internals page * fix various links * itemized list * mention dispatching on functions not in the array API standard * examples of duckarrays * add intended audience to xarray internals section * draft page on chunked arrays * move paragraph on why its called a duck array upwards * delete section on numpy ufuncs * explain difference between .values and to_numpy * strongly prefer to_numpy over values * recommend to_numpy instead of values in the how do I? page * clearer about using to_numpy * merge section on missing features * remove todense from examples * whatsnew * double that Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * numpy array class clarification Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * Remove sentence about xarray's internals Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * array API standard Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * proper link for sparse.COO type Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * links to docstrings of array types Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * don't put variable in parentheses Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * double backquote formatting Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * better bracketing Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * fix list formatting * add links to glue packages, dask, and cubed * link to todense method Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * link to numpy-like arrays page * link to numpy ufunc docs * more text ab… 2023-07-05T20:08:19Z 2023-07-05T20:08:19Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
429ff9b1339004de27453874dd2f4aef5461a49a Update minimum version of typing extensions in pre-commit (#7960) 2023-07-05T15:43:40Z 2023-07-05T15:43:40Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
4b544211b42a66744893a80c3ddc45dd9f9479de Duck array documentation improvements (#7911) * draft updates * discuss array API standard * fix sparse examples so they run * Deepak's suggestions Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * link to duck arrays user guide from internals page * fix various links * itemized list * mention dispatching on functions not in the array API standard * examples of duckarrays * add intended audience to xarray internals section * move paragraph on why its called a duck array upwards * delete section on numpy ufuncs * explain difference between .values and to_numpy * strongly prefer to_numpy over values * recommend to_numpy instead of values in the how do I? page * clearer about using to_numpy * merge section on missing features * remove todense from examples * whatsnew * double that Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * numpy array class clarification Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * Remove sentence about xarray's internals Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * array API standard Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * proper link for sparse.COO type Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * links to docstrings of array types Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * don't put variable in parentheses Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * double backquote formatting Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * better bracketing Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * fix list formatting * add links to glue packages, dask, and cubed * link to todense method Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * link to numpy-like arrays page * link to numpy ufunc docs * add example of using .to_nu… 2023-06-29T14:39:21Z 2023-06-29T14:39:21Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
e5071aad4a081253a6df5ce372c4637df7cad3f5 Allow cubed arrays to be passed to flox groupby (#7941) * fix error raised by ruff * whatsnew 2023-06-26T15:28:03Z 2023-06-26T15:28:03Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
a80ff50830b032d0e422c1e7344164d239906e92 Release summary for v2023.06.0 (#7934) * release summary * add contributors * delete empty whatsnew --------- Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> 2023-06-23T03:02:11Z 2023-06-23T03:02:11Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
4156ce53a8e4b65bbeaabebe0b2071d3d9b18c01 Add note on why we only add empty whatsnew after releasing 2023-06-21T19:34:23Z 2023-06-21T19:34:23Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
69445c62953958488a6b35fafd8b9cfd6c0374a5 Note in whatsnew on re-installing to register dask entrypoint 2023-05-24T16:22:01Z 2023-05-24T16:22:01Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
05c7888d0faf753968e12cd338730f7a7f3c891a Array API fixes for astype (#7847) * array API fixes for astype * whatsnew 2023-05-19T15:11:16Z 2023-05-19T15:11:16Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
97a2032a163bb36f6d9e4bf7bff3eca7d7e3faa4 Whats new for release of v2023.05.0 (#7849) * move an entry to the correct place * release summary * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> 2023-05-19T02:17:55Z 2023-05-19T02:17:55Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
08f06c434546fc1de8eaf04011591d2d31b874b2 Ensure all tags have been fetched 2023-05-18T22:17:06Z 2023-05-18T22:17:06Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
6cd6122ab7850842624bfe40579c5b7dc80185f9 Generalize handling of chunked array types (#7019) * generalise chunk methods to allow cubed * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fic typing typo * fixed circular import * fix some mypy errors * added cubed to mypy ignore list * simplify __array_ufunc__ check * Revert "simplify __array_ufunc__ check" as I pushed to wrong branch This reverts commit cdcb3fb7d87e7420210ed4a3219f4ee90f56fe21. * update cubed array type * fix missed conflict * sketch for ChunkManager adapter class * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Remove erroneous docstring about usage of map_blocks Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * apply_ufunc -> apply_gufunc Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * chunk -> from_array Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> * remove staticmethods * attempt to type methods of ABC * from_array * attempt to specify types * method for checking array type * Update pyproject.toml * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fixed import errors * generalize .chunk method kwargs * used dask functions in dask chunkmanager * define signatures for apply_gufunc, blockwise, map_blocks * prototype function to detect which parallel backend to use * add cubed.apply_gufunc * ruffify * add rechunk and compute methods for cubed * xr.apply_ufunc now dispatches to chunkmanager.apply_gufunc * CubedManager.chunks * attempt to keep dask and cubed imports lazy * generalize idxmax * move unify_chunks import to ChunkManager * generalize Dataset.load() * check explicitly for chunks attribute instead of hard-coding cubed * better function names * add cubed version of unify_chunks * recognize wrapped duck dask arrays (e.g. pin… 2023-05-18T17:34:30Z 2023-05-18T17:34:30Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
4faecb453d414b829803abeda4ba1bedd8142f5d Clarifications in contributors guide (#7595) * update links to issue labels * clarify that we actually use ruff now in pre-commit * mention absolufy-imports which we use in pre-commit * checked that example test file works * fix formatting of nested bullets * add pre-commit to docs env * clarify which environment to use for docstrings * explain how to view local html docs build * clarify what pip -e does * update git commit message requirements * clarify that small changes don't require local testing * whatsnew * point to CI build of the docs * add suggestion to use github desktop * image to help find view docs button on readthedocs * update outdated screenshot of green ci * internal link to point to where you can view RTD build * Add ruff as separate entry in list of pre-commit checks Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> --------- Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> 2023-03-13T17:51:24Z 2023-03-13T17:51:24Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
49ae0f8dd39e8fc59ed3476f50b9938bbb40d0c4 State which variables not present in drop vars error message (#7518) * test * improve error message * whatsnew * order the names of missing variables before raising * escape regex so it matches 2023-03-09T20:47:46Z 2023-03-09T20:47:46Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
d2a68d05a2a7e76fa3d4b78671a79608d233260c Update apply_ufunc output_sizes error message (#7509) * test for error message * fix * whatsnew --------- Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> 2023-02-07T05:01:35Z 2023-02-07T05:01:35Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
43ec7a907c7e384608b4c6b1f4c9b1258898f0dc Docs: add example of writing and reading groups to netcdf (#7338) * example of writing and reading groups to netcdf * whatsnew 2022-12-01T16:24:04Z 2022-12-01T16:24:04Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
e1936a98059ae29da2861f58a7aff4a56302aac1 Ensure Coarsen.construct keeps all coords (#7233) * test * fix * whatsnew * group related tests into a class * Update xarray/core/rolling.py * Update xarray/core/rolling.py Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> 2022-10-28T17:46:49Z 2022-10-28T17:46:49Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
6cb97f645475bddf2f3b1e1a5f24f0f9de690683 Example using Coarsen.construct to split map into regions (#7192) * example using coarsen.construct to split map into regions * whatsnew * moved to reshape page * PR number * fix internal links * Update doc/whats-new.rst Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com> 2022-10-21T18:14:55Z 2022-10-21T18:14:55Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
208e58869758d7ceb01fba8422e2caaa7296268c 2022.09.0 release summary (#7107) * release summary * Update doc/whats-new.rst Co-authored-by: Maximilian Roos <5635139+max-sixty@users.noreply.github.com> * correct after Max's wording change Co-authored-by: Maximilian Roos <5635139+max-sixty@users.noreply.github.com> 2022-09-29T21:54:14Z 2022-09-29T21:54:14Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
77b9e8a9186b74acc1c64bb56f4293bd042b80a0 Fill in missing docstrings for ndarray properties (#7090) * fill in missing docstrings for ndarray properties * whatsnew 2022-09-26T22:05:33Z 2022-09-26T22:05:33Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
073f414eb810af02e2ad12d35bcd313558921837 Remove dask_array_type checks (#7023) * remove dask_array_type checks * remove dask_array_compat * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * restore xarray wraps dask precedence * fully remove dask_aray_compat.py file * remove one reference to cupy * simplify __apply_ufunc__ check Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> 2022-09-13T00:35:22Z 2022-09-13T00:35:22Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
d797bfbce2db75131ca094e741e50be7b69b9f15 Fix core team page (#6913) * correct link to Benoit's profile * add Alessandro and Aureliana * missing newline 2022-08-15T13:39:43Z 2022-08-15T13:39:43Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447
95aca7d6a4a63aa08702dd6f6ceca7d498e20fbc Automatic PR labeler (#6912) * label all new prs with needs-triage * label new prs according to files they touch * newlines at end of files 2022-08-12T19:47:18Z 2022-08-12T19:47:18Z Tom Nicholas 325c282d9b8e5cd68a5fe820056d787d0a543525 GitHub cd792325681cbad9f663f2879d8b69f1edbb678f xarray 13221727 TomNicholas 35968931 web-flow 19864447

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