sha,message,author_date,committer_date,raw_author,raw_committer,repo,author,committer
ed421e80e69788b92cdda050b0ac389ecce590fb,"Improve open_mfdataset deprecation warnings (#3101)

* Updated deprecation warnings to be more specific and link to docs

* Corresponding tests checking for new warning

* Removed trailing whitespace",2019-07-12T15:43:31Z,2019-07-12T15:43:31Z,26a6f89d5f52aa3fe5267933be6139d10dfff2a7,f10b21bed2846b879806f87039b77245b18e7671,13221727,35968931,1217238
8c61997d0daa5564a007458ab4febebcecdc30af,Removed rogue print statement in N-D combine (#3074),2019-07-02T14:16:42Z,2019-07-02T14:16:42Z,26a6f89d5f52aa3fe5267933be6139d10dfff2a7,f10b21bed2846b879806f87039b77245b18e7671,13221727,35968931,1217238
17d18ce8230fea74e72ad59b84386cf662448d45,"Rename combine functions (#3043)

* Renamed combine functions in code

* Renamed combine functions in docs

* pep8 fixes

* Fixed mistake in docstring

* Removed trailing whitespace in error messages",2019-06-26T15:00:38Z,2019-06-26T15:00:38Z,26a6f89d5f52aa3fe5267933be6139d10dfff2a7,f10b21bed2846b879806f87039b77245b18e7671,13221727,35968931,1217238
6b33ad8b3e56834c3a345f21afc17680a164c5e9,"API for N-dimensional combine (#2616)

* concatenates along a single dimension

* Wrote function to find correct tile_IDs from nested list of datasets

* Wrote function to check that combined_tile_ids structure is valid

* Added test of 2d-concatenation

* Tests now check that dataset ordering is correct

* Test concatentation along a new dimension

* Started generalising auto_combine to N-D by integrating the N-D concatentation algorithm

* All unit tests now passing

* Fixed a failing test which I didn't notice because I don't have pseudoNetCDF

* Began updating open_mfdataset to handle N-D input

* Refactored to remove duplicate logic in open_mfdataset & auto_combine

* Implemented Shoyers suggestion in #2553 to rewrite the recursive nested list traverser as an iterator

* --amend

* Now raises ValueError if input not ordered correctly before concatenation

* Added some more prototype tests defining desired behaviour more clearly

* Now raises informative errors on invalid forms of input

* Refactoring to alos merge along each dimension

* Refactored to literally just apply the old auto_combine along each dimension

* Added unit tests for open_mfdatset

* Removed TODOs

* Removed format strings

* test_get_new_tile_ids now doesn't assume dicts are ordered

* Fixed failing tests on python3.5 caused by accidentally assuming dict was ordered

* Test for getting new tile id

* Fixed itertoolz import so that it's compatible with older versions

* Increased test coverage

* Added toolz as an explicit dependency to pass tests on python2.7

* Updated 'what's new'

* No longer attempts to shortcut all concatenation at once if concat_dims=None

* Rewrote using itertools.groupby instead of toolz.itertoolz.groupby to remove hidden dependency on toolz

* Fixed erroneous removal of utils import

* Updated docstrings to include an example of multidimensional concatenation

* Clarified auto_combine docstring for N-D behaviour

* Added unit test for nested list of Datasets with different variables

* Minor spelling and pep8 fixes

* Started working on a new api with both auto_combine and manual_combine

* Wrote basic function to infer concatenation order from coords.

Needs better error handling though.

* Attempt at finalised version of public-facing API.

All the internals still need to be redone to match though.

* No longer uses entire old auto_combine internally, only concat or merge

* Updated what's new

* Removed uneeded addition to what's new for old release

* Fixed incomplete merge in docstring for open_mfdataset

* Tests for manual combine passing

* Tests for auto_combine now passing

* xfailed weird behaviour with manual_combine trying to determine concat_dim

* Add auto_combine and manual_combine to API page of docs

* Tests now passing for open_mfdataset

* Completed merge so that #2648 is respected, and added tests.

Also moved concat to it's own file to avoid a circular dependency

* Separated the tests for concat and both combines

* Some PEP8 fixes

* Pre-empting a test which will fail with opening uamiv format

* Satisfy pep8speaks bot

* Python 3.5 compatibile after changing some error string formatting

* Order coords using pandas.Index objects

* Fixed performance bug from GH #2662

* Removed ToDos about natural sorting of string coords

* Generalized auto_combine to handle monotonically-decreasing coords too

* Added more examples to docstring for manual_combine

* Added note about globbing aspect of open_mfdataset

* Removed auto-inferring of concatenation dimension in manual_combine

* Added example to docstring for auto_combine

* Minor correction to docstring

* Another very minor docstring correction

* Added test to guard against issue #2777

* Started deprecation cycle for auto_combine

* Fully reverted open_mfdataset tests

* Updated what's new to match deprecation cycle

* Reverted uamiv test

* Removed dependency on itertools

* Deprecation tests fixed

* Satisfy pycodestyle

* Started deprecation cycle of auto_combine

* Added specific error for edge case combine_manual can't handle

* Check that global coordinates are monotonic

* Highlighted weird behaviour when concatenating with no data variables

* Added test for impossible-to-auto-combine coordinates

* Removed uneeded test

* Satisfy linter

* Added airspeedvelocity benchmark for combining functions

* Benchmark will take longer now

* Updated version numbers in deprecation warnings to fit with recent release of 0.12

* Updated api docs for new function names

* Fixed docs build failure

* Revert ""Fixed docs build failure""

This reverts commit ddfc6dd1aa2d3164e1e2e7f090dac95e8789cc1c.

* Updated documentation with section explaining new functions

* Suppressed deprecation warnings in test suite

* Resolved ToDo by pointing to issue with concat, see #2975

* Various docs fixes

* Slightly renamed tests to match new name of tested function

* Included minor suggestions from shoyer

* Removed trailing whitespace

* Simplified error message for case combine_manual can't handle

* Removed filter for deprecation warnings, and added test for if user doesn't supply concat_dim

* Simple fixes suggested by shoyer

* Change deprecation warning behaviour

* linting",2019-06-25T15:14:34Z,2019-06-25T15:14:34Z,26a6f89d5f52aa3fe5267933be6139d10dfff2a7,f10b21bed2846b879806f87039b77245b18e7671,13221727,35968931,1217238
c33dab237a0aca316b7f6d4ba10857829a895a25,"Improve name concat (#2792)

* Added tests of desired name inferring behaviour

* Infers names

* updated what's new",2019-03-04T05:39:20Z,2019-03-04T05:39:20Z,26a6f89d5f52aa3fe5267933be6139d10dfff2a7,f10b21bed2846b879806f87039b77245b18e7671,13221727,35968931,1217238
57cd76d7521526a39a6e94eeacf1e40ef7b974b6,"Bugfix/reduce no axis (#2769)

* New test for reduce func which takes no axes

* Fixed axis logic

* Recorded fix in what's new

* Added intermediate variable",2019-02-19T06:12:59Z,2019-02-19T06:12:59Z,26a6f89d5f52aa3fe5267933be6139d10dfff2a7,f10b21bed2846b879806f87039b77245b18e7671,13221727,35968931,1217238
e8bf4bf9a744148f1f6586cabe7f5c5ef6e9bf26,"Bugfix for line plot axes (#2726)

* Fixed logic for setting line data

* Added tests to check line data matches values of correct coords

* Recorded bugfix for line plots

* Update doc/whats-new.rst

Co-Authored-By: TomNicholas <35968931+TomNicholas@users.noreply.github.com>

* Update doc/whats-new.rst

Co-Authored-By: TomNicholas <35968931+TomNicholas@users.noreply.github.com>",2019-01-30T02:02:22Z,2019-01-30T02:02:22Z,26a6f89d5f52aa3fe5267933be6139d10dfff2a7,f10b21bed2846b879806f87039b77245b18e7671,13221727,35968931,1217238
dc87dea52351835af472d131f70a7f7603b3100e,"Hotfix for #2662 (#2678)

* Hotfix for #2662

* Separate keyfunc

* Added a test, and made others slightly stricter

* Comment explaining test better",2019-01-17T13:05:42Z,2019-01-17T13:05:42Z,26a6f89d5f52aa3fe5267933be6139d10dfff2a7,f10b21bed2846b879806f87039b77245b18e7671,13221727,35968931,1217238
250b19c8fff56c295f6047956400863db22cb48b,"Source encoding always set when opening datasets (#2626)

* Add source encoding if not already present when opening dataset

* Test source encoding present

* Updated what's new

* Revert ""Updated what's new""

This reverts commit 78587990cfdfdfb74f456289b41be5e0e3036496.

* Don't close file-like objects

* Updated whats's new

* DOC: document source encoding for datasets",2018-12-30T01:00:35Z,2018-12-30T01:00:35Z,26a6f89d5f52aa3fe5267933be6139d10dfff2a7,f10b21bed2846b879806f87039b77245b18e7671,13221727,35968931,1217238
9e8707d2041cfa038c31fc2284c1fe40bc3368e9,"Feature: N-dimensional auto_combine (#2553)

* concatenates along a single dimension

* Wrote function to find correct tile_IDs from nested list of datasets

* Wrote function to check that combined_tile_ids structure is valid

* Added test of 2d-concatenation

* Tests now check that dataset ordering is correct

* Test concatentation along a new dimension

* Started generalising auto_combine to N-D by integrating the N-D concatentation algorithm

* All unit tests now passing

* Fixed a failing test which I didn't notice because I don't have pseudoNetCDF

* Began updating open_mfdataset to handle N-D input

* Refactored to remove duplicate logic in open_mfdataset & auto_combine

* Implemented Shoyers suggestion in #2553 to rewrite the recursive nested list traverser as an iterator

* --amend

* Now raises ValueError if input not ordered correctly before concatenation

* Added some more prototype tests defining desired behaviour more clearly

* Now raises informative errors on invalid forms of input

* Refactoring to alos merge along each dimension

* Refactored to literally just apply the old auto_combine along each dimension

* Added unit tests for open_mfdatset

* Removed TODOs

* Removed format strings

* test_get_new_tile_ids now doesn't assume dicts are ordered

* Fixed failing tests on python3.5 caused by accidentally assuming dict was ordered

* Test for getting new tile id

* Fixed itertoolz import so that it's compatible with older versions

* Increased test coverage

* Added toolz as an explicit dependency to pass tests on python2.7

* Updated 'what's new'

* No longer attempts to shortcut all concatenation at once if concat_dims=None

* Rewrote using itertools.groupby instead of toolz.itertoolz.groupby to remove hidden dependency on toolz

* Fixed erroneous removal of utils import

* Updated docstrings to include an example of multidimensional concatenation

* Clarified auto_combine docstring for N-D behaviour

* Added unit test for nested list of Datasets with different variables

* Minor spelling and pep8 fixes

* Reverted API so that N-D generalisation is hidden

* Removed infer_order_from_coords argument",2018-12-13T17:15:56Z,2018-12-13T17:15:56Z,26a6f89d5f52aa3fe5267933be6139d10dfff2a7,f10b21bed2846b879806f87039b77245b18e7671,13221727,35968931,1217238
6d55f99905d664ef73cb708cfe8c52c2c651e8dc,"Global option to always keep/discard attrs on operations (#2482)

* Added a global option to always keep or discard attrs.

* Updated docs and options docstring to describe new keep_attrs global option

* Updated all default keep_attrs arguments to check global option

* New test to check attributes are retained properly

* Implemented shoyer's suggestion so attribute permanence test now passes for reduce methods

* Added tests to explicitly check that attrs are propagated correctly

* Updated what's new with global keep_attrs option

* Bugfix to stop failing tests in test_dataset

* Test class now inherits from object for python2 compatibility

* Fixes to documentation

* Removed some unneccessary checks of the global keep_attrs option

* Removed whitespace typo I just created

* Removed some more unneccessary checks of global keep_attrs option (pointed out by dcherian)",2018-10-30T01:01:07Z,2018-10-30T01:01:07Z,26a6f89d5f52aa3fe5267933be6139d10dfff2a7,f10b21bed2846b879806f87039b77245b18e7671,13221727,35968931,1217238